# of Citations

Ontological analysis of gene expression data: current tools, limitations, and open problems.
Bioinformatics 21 (18), 3587-3595

A systems biology approach for pathway level analysis.
Genome Research, 2007, Vol. 17 (10), pages 1537-1545.

A novel signaling pathway impact analysis (SPIA).
Bioinformatics (2009), Vol. 25 (1), pages 75-82.

Global functional profiling of gene expression.
Genomics 81 (2), 98-104

Reliability and reproducibility issues in DNA microarray measurements.
TRENDS in Genetics 22 (2), 101-109

Data analysis tools for DNA microarrays.
(Book) CRC Press

Profiling gene expression using onto-express.
Genomics 79 (2), 266-270

Use and misuse of the gene ontology annotations.
Nature Reviews Genetics 9 (7), 509-515

Onto-tools, the toolkit of the modern biologist: onto-express, onto-compare, onto-design and onto-translate.
Nucleic acids research 31 (13), 3775-3781

Onto-Tools: New Additions and Improvements in 2006.
Nucleic Acids Research, Vol. 35, pages W206-W211, July 2007.

Statistics and data analysis for microarrays using R and bioconductor.
(Book) CRC Press

A system biology approach for the steady-state analysis of gene signaling networks.
​In Proceedings of the Congress on pattern recognition 12th Iberoamerican conference on Progress in pattern recognition, image analysis and applications (CIARP’07).