We need to extract the list of all DE genes for each pathway, like what Ingenuity Pathway Analysis (IPA) provides for canonical pathway analysis. So, we wonder whether iPathwayGuide has an option/function to extract the names of all DE genes for each of all identified pathways. If so, would you please advise us? Thanks!
On the Pathways tab, on the right hand side, “pathway details” then “Gene table” then the “+” sign. When you click on that, you will see a table with the genes on the pathway. there you can sort, search for specific genes, etc. You can also download the entire table with the usual download icon.