iPathwayGuide supports analysis of Human, mouse, and rat. It supports the following files formats:
CuffDiff
DESeq
​EdgeR
SAS/JMP Genomics
nSolver (NanoString Technologies)
Generic tab delimited .txt file (must contain gene symbol or uniprot ID, log2FC, p-value)
SCIEX SWATH 2.0 proteomics data files
Select Affymetrix CEL files*

*Supported Affy CEL Files may take several minutes to upload

Human
Human Genome U133
Human Genome U133A 2.0
Human Genome U133 Plus 2.0
Human Genome U95
Human Genome U35K

Mouse
Mouse Expression Set 430
Mouse Expression Set 430 2.0
Mouse Genome 430A 2.0

Rat
Rat Expression Set 230
Rat Genome 230 2.0
Rat Genome U34