iBioGuide Release Notes2018-10-30T12:32:15-04:00
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iBioGuide Release Notes

Release Notes – Summer 20192019-07-09T14:15:50-04:00

On June 21, 2019, Advaita released a major update to its platform, with improvements to iPathwayGuide, iVariantGuide, and iBioGuide.

IMPROVEMENTS

The Advaita Knowledgebase was updated to version 1906 and now includes:

  • 3 organisms: homo sapiens, mus musculus, rattus norvegicus
  • 216,544 Genes
  • 2,307 Diseases
  • 45,049 GO terms
  • 5,694 Drugs
  • 985 Pathways
  • 5,396 miRNAs
  • 92,745 Proteins
  • 29,761,157 References
  • 3,042,479 Interactions
  • 477,289 Experiments

For a complete list of databases and versions, please see report information within each application.

 

NEW FEATURES

  • iBioGuide: Users can now log in to iBioGuide using their Advaita credentials, the same account they use for iPathwayGuide and iVariantGuide.
  • iPathwayGuide: Experiment and references for Network Analysis are now shown in a paged view, improving load time.

BUG FIXES

  • iPathwayGuide: Meta-Analysis icon was updated to stay consistent with menu selections.
Release Notes – Winter 20182019-03-22T19:53:24-04:00

On January 12, 2018, Advaita released a major update to its platform, with improvements to iPathwayGuide, iVariantGuide, and iBioguide.

IMPROVEMENTS

The Advaita Knowledgebase was updated to version 1711 and now includes:

  • 3 organisms: homo sapiens, mus musculus, rattus norvegicus
  • 213,390 Genes
  • 1,933 Diseases
  • 44,976 GO terms
  • 4,791 Drugs
  • 955 Pathways
  • 5,710 miRNAs
  • 3,161,730 References
  • For a complete list of databases and versions, please see report information within each application.

NEW FEATURES

  • iVariantGuide: API Client now accepts multi-sample analyses
  • Improvements to account registration page to ensure proper organization affiliation.

BUG FIXES

  • iPathwayGuide: Improvements to parsing of CuffDiff-formatted files to maintain association of phenotype labels. Fold changes and p-value parsing remains untouched.
Spring 2016 Release – June 19, 20162018-08-23T10:37:53-04:00

The following components were added or addressed in this release.

  • Extensive databases updates including:
    • KEGG pathways, drugs, and diseases
    • NCBI genes
    • TargetScan miRNAs
    • Gene Ontologies
    • PubMed references
  • Improved search results
  • Several bug fixes
  • Changes to UI backend
2015 Release2018-08-23T10:39:41-04:00

The databases contained in iBioGuide were updated with the following releases:

  • Pathways, Drugs, Diseases – KEGG – Release 73.0, March 16, 2015
  • Gene Ontology Terms – Gene Ontology Consortium – September 19, 2014
  • MicroRNA
    • TargetScan – Release 6.2, March 2015
    • MIRBase – Version 21, June 2014
  • Genes – NCBI – March 2015