Advaita Blog and News
Not getting much from your pathway analysis? Use Impact Analysis instead of Enrichment alone.
How are you currently analyzing your RNASeq and proteomics data? Are you currently using one of the many free tools available for pathway analysis, such as DAVID? Or, are you perhaps using Qiagen's Ingenuity Pathway Analysis (IPA)? If yes, [...]
Advaita is taking the lead…
You may be interested this recent story in GenomeWeb about how Advaita is taking the lead in the pathway analysis of RNASeq and proteomics data. We are excited that more and more people are gaining access to iPathwayGuide and [...]
Advaita Scientists Awarded Another Pathway Analysis Patent
A while ago, I was doing the pathway analysis of a data set coming from a fat remodeling experiment in mice. This experiment involved a drug candidate known to transform the "regular fat" or white adipose tissue into "brown fat" [...]
iPathwayGuide Analysis Finds Both Overlapping and Species-Specific Endocrine Disrupting Chemical Response Signatures in Sardine and Mackerel
Orthologs in Systems Biology A recent paper by Renaud, et al., (Environmental Pollution, Vol 244, January 2019, pp 926-937) points out the significant hazard posed by endocrine disrupting chemical (EDC) exposure for aquatic organisms. Renaud, et al., employed iPathwayGuide as [...]
Advaita Bioinformatics displaces major competitor in Australia and New Zealand
Advaita announces new distribution partnership with Millennium Science. ANN ARBOR, Michigan, April 23, 2019 – Advaita Bioinformatics, provider of the industry-leading gene expression and genomic variation analysis platform, announces a new partnership with Millennium Science for distribution of Advaita’s software [...]
How do you validate a pathway analysis method? How do you compare such methods?
My previous post, Pathway Analysis vs Gene Set Analysis, ended with an interesting question: has anybody really compared side-by-side gene set analysis methods and pathway analysis methods on the same data sets? Well, the answer is: not yet! The [...]
Pathway Analysis vs Gene Set Analysis: What is the Difference and When Should I Use Each?
To some, pathway analysis and gene set analysis are synonyms. However, there are important distinctions between these two groups of methods, and they provide different results. This is part of a series of articles on pathway analysis methods. Pathway [...]
Subscription vs. purchasing individual analyses – which one do I want?
Several of our customers have asked us this question: "I am not a core facility, nor do I have a huge lab and therefore I do not have a lot of RNA-Seq data. Should I buy a subscription to iPathwayGuide [...]
AdvaitaBio releases a new version of iPathwayGuide, the world’s most advanced RNA-seq and gene expression analysis software
Advaita Bioinformatics is announcing a new release of iPathwayGuide, the world’s most advanced RNA-seq and gene expression analysis software. This release includes unprecedented gene network analysis and literature mining capabilities. The newly added network analysis capabilities allow the scientists to [...]
When did you do your last background check?
In the world of bioinformatics, we all need to be careful when analyzing our data. I receive countless questions about what background should be used when analyzing gene expression or protein expression data. In this blog post I will [...]
Why do I need to correct my p-values?
Hi there. Advaita is dedicated to bringing you the most advanced, easiest-to-use bioinformatics tools out there. And that includes educational materials designed to help you take advantage of all the powerful features we offer, including p-value correction factors. This [...]
Wayne State and Advaita Researchers Can Distinguish Between Aggressive and Less Aggressive Cancer
Advaita Bioinformatics is a leader in the interpretation of high-throughput biomedical data including variant interpretation, pathway analysis, and disease subtype discovery. In a breakthrough in cancer diagnosis, a technology developed by a team of researchers from Wayne State University and [...]
Advaita Bioinformatics Awarded Competitive Grant from the National Science Foundation
Plymouth, MI (August 13, 2017 )– Advaita Bioinformatics, one of the most innovative companies in the field of Genomics, has been awarded a National Science Foundation (NSF) Small Business Innovation Research (SBIR) grant of $225,000 to conduct research and development [...]
Advaita Launches One Of The First HIPAA-Compliant Genetic Interpretation Analysis Tool For Clinics
Plymouth, MI (June 13, 2017) - Genetic analysis and variant interpretation has come a long way. However, to make this science a viable option for patient care, it is required for companies to make this data HIPAA compliant, easily readable, [...]
Cloudbleed and Advaita
On February 17, 2017, we found out about Cloudbleed, a major leak of user data affecting several sites and services that use infrastructure provided by Cloudflare. As part of Advaita’s commitment to offering a HIPAA compliant secure informatics platform, we [...]