iPathwayGuide FAQs

We submitted our publication with images generated in the ipathwayguide analysis. The journal got back to us and asked for vector images or high resolution tiffs (600-900 dpi), and the font used in the exported images are pixelated when you zoom in. Is there a way to fix this or to change the font in the exported image? Can I set the resolution when I download the image?

By |2022-05-11T14:18:25-04:00May 11, 2022||

Regarding the figures, you need to download them in .SVG format from iPathwayGuide. Any downloadable figure in our software can be downloaded as SVG. The SVG is a scalable vector format that can scale to any size and offers perfect [...]

I am trying to do pathway analysis for our -organism of you are working with- data. But I can’t select the organism for that as there is no option to select the organism. Is it possible to get data for this organism analyzed using iPathwayGuide?

By |2022-05-11T14:16:18-04:00May 11, 2022||

iPathwayGuide supports directly human, mouse and rat. For other organisms, you need to first map your genes to orthologs. Many of our users have done this very successfully. Here is an example in which iPathwayGuide was used to make important [...]

We need to extract the list of all DE genes for each pathway, like what Ingenuity Pathway Analysis (IPA) provides for canonical pathway analysis. So, we wonder whether iPathwayGuide has an option/function to extract the names of all DE genes for each of all identified pathways. If so, would you please advise us? Thanks!

By |2022-05-11T14:11:41-04:00May 11, 2022||

On the Pathways tab, on the right hand side, “pathway details” then “Gene table” then the “+" sign. When you click on that, you will see a table with the genes on the pathway. there you can sort, search for [...]

What kind of files can I upload?

By |2018-10-13T11:06:51-04:00August 22, 2018||

iPathwayGuide supports analysis of Human, mouse, and rat. It supports the following files formats: CuffDiff DESeq ​EdgeR SAS/JMP Genomics nSolver (NanoString Technologies) Generic tab delimited .txt file (must contain gene symbol or uniprot ID, log2FC, p-value) SCIEX SWATH 2.0 [...]

Do you offer a free trial?

By |2019-06-13T11:26:55-04:00August 22, 2018||

It is a great idea to use the software and explore the capabilities before making a purchase. The way to do this is to create a free account on our web site www.advaitabio.com. Once you create an account, you will [...]

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