Question: I went back to analyses that I had previously paid for, opened them and a warning came up for indicated that the analyses were "deprecated" so I hit the re-analyze button only to find that the files are now [...]
iPathwayGuide supports analysis of Human, mouse, and rat. It supports the following files formats: CuffDiff DESeq EdgeR SAS/JMP Genomics nSolver (NanoString Technologies) Generic tab delimited .txt file (must contain gene symbol or uniprot ID, log2FC, p-value) SCIEX SWATH 2.0 [...]
Please make sure your are using the "...gene_exp.diff" file that comes from CuffLinks. There are some applications that claim to emulate CuffDiff output (e.g. Galaxy). If you are using one of these applications, please make sure the output file has [...]
Generally, each analysis takes about 15 minutes to complete. If there are other analyses queued ahead of yours, it may take a bit longer. You will receive an email as soon as the analysis is complete.
It is a great idea to use the software and explore the capabilities before making a purchase. The way to do this is to create a free account on our web site www.advaitabio.com. Once you create an account, you will [...]
Here are the legends describing the symbols used on the pathway diagrams, gene networks and GO directed acyclic graph, respectively. Click an image for a larger view.
Yes! From the dashboard, just click share on any completed report. Then enter the email address for the person you wish to share it with. If they do not have an account, they will be prompted to create on. Once [...]
iPathwayGuide is designed to work with all the latest major browser platforms: Google Chrome Mozilla Firefox Apple Safari (Mac only, iOS not supported yet) Microsoft Internet Explorer 11 - Some image download capabilities may not function
iPathwayGuide works with the most popular differential expression files. Some 3rd party emulators (e.g. Galaxy) may structure their data slightly differently. Click on the sample files below to see the structure of these files. Download (Demo- GSE47363 - The [...]
Citing iPathwayGuide Using Advaita Bio’s products or content for any form of publication (e.g. print, electronically) requires researchers to cite them. Please use one of the options below for citations: • “The Data (significantly impacted pathways, biological processes, molecular interactions, miRNAs, [...]
GEO2R does not perform normalization for Affymetrix CEL files. The Advaita iPathwayGuide CEL file uploader currently utilizes the Gene-chip Robust Multi-array Average (GCRMA) normalization method. As such, there can be discrepancies between CEL files processed with GEO2R vs. iPathwayGuide.